CITING AND AVAILABILITY LAGAN
and MLAGAN should be cited as
Michael
Brudno, Chuong Do, Gregory
Cooper, Michael F. Kim, Eugene
Davydov, Eric D. Green, Arend Sidow and Serafim
Batzoglou
Shuffle-LAGAN
should be cited as
Michael
Brudno, Sanket Malde, Alexander Poliakov,
Chuong Do, Olivier Courone, Inna Dubchak, and Serafim
Batzoglou
CHAOS
should be cited as
Michael
Brudno, Michael Chapman, Berthold Gottgens,
Serafim
Batzoglou, and Burkhard Morgenstern
DOWNLOAD the LAGAN Toolkit
Source code of the LAGAN toolkit is freely available to all under the
GNU Public license
(GPL).
You can download the source codes of the latest LAGAN toolkit (version
2.0), which includes LAGAN, M-LAGAN and Shuffle-LAGAN here. If you use LAGAN regularly please contact the authors to be placed on a
mailing list to which we send information about bug fixes and new
versions.
We currently do not distribute the LAGAN executables, only the source
codes. However, if someone were to compile LAGAN under a particular
platform (e.g. Windows) we would be happy to distribute the executables
and acknowledge the contributor.
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple
alignment of genomic DNA,
Genome Research 2003 Apr;13(4):721-31.
Abstract
Full Text
Glocal alignment: finding rearrangements during alignment. Special Issue on the
Proceedings of the ISMB 2003,
Bioinformatics
19: 54i-62i, 2003.
Abstract
Full Text
Fast and sensitive multiple alignment of long genomic sequences.
BMC Bioinformatics,
4:66 2003.
Abstract
Full Text
